I just had an idea that maybe will be helpful.
Create a silence track of let's say 10 seconds. Name it silence.
Import it in the ST3, duplicate it and name it "x song name intro".
Then manually cut it with the trim edit to the correct duration and manualy add the blinking metronome and set it to show only while playing.
Then put this creation before the song and turn on the automatic transition from the intro to the song.
That way when you hit play it will be the 1st down beat and the rest will be visually there.
Maybe it is stupid idea but maybe it will be useful.